Holmes is expected to miss the rest of the regular season, working back from a shoulder strain NEW YORK — Clay Holmes looked like the first-half version of himself on Monday in Toronto, inducing three ground balls in a scoreless ninth inning against the Blue Jays. At the time, that outing fit the narrative of Holmes righting the ship, finding a groove before the calendar flips to October. Could the right-hander recapture his form in the back end of the bullpen, washing away what’s been a rocky last few months since his trip to the All-Star Game? The Yankees won’t…